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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Cla022437 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 339aa MW: 37723.8 Da PI: 9.9411 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla022437 | genome | ICuGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 394.3 | 1.7e-120 | 1 | 339 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa...aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla 92
md++g+re r+k+ +y++a + + +++ +q+m+++aerda+++ernlalsekkaa+aerdma+lqrd+a+aern+al+erdn++++l+++ensl+
Cla022437 1 MDESGHREngRHKAdQYKSAqggPWMMQHQpsMKQIMTIMAERDAALQERNLALSEKKAALAERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSLT 100
99****9999****9***5545544444431145***************************************************************998 PP
GAGA_bind 93 ..salpvgvqvlsgtksidslqqlse...pqledsavelreeekle.al...pieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
+++p+g+q+ +g+k+i++ qq+++ p++++s ++ re++ ++ a p+ ++ ++a+++k++k++++ ++p +k +k ++k +++ ++ +
Cla022437 101 nnMSCPPGCQIARGVKHIHHPQQQQHphvPHMNESNYNSREMHPSNdACpvsPVASESTKARQSKRPKEGKTVTTPNKKVSKGPRKVKREAEDLN----- 195
7789*******************88888999*******999997642441115555556666666677777777777666664444332222222..... PP
GAGA_bind 184 der............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRi 255
+ sk+++k +dl+ln+v++Dest+P+P+CsCtG+ rqCYkWGnGGWqSaCCtttiS+yPLP+++++r+aR+
Cla022437 196 --KvmlgksqewkdgigimsggddlnkqlvvSKSDWKGQDLGLNQVAFDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTISMYPLPAVPNKRHARL 293
..111222234789************************************************************************************** PP
GAGA_bind 256 agrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+grKmS++af+klL++LaaeG+dls pvDLk+hWAkHGtn+++ti+
Cla022437 294 GGRKMSGSAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 339
*********************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MDESGHRENG RHKADQYKSA QGGPWMMQHQ PSMKQIMTIM AERDAALQER NLALSEKKAA 60
LAERDMAYLQ RDAAIAERNN ALLERDNAIA TLQYRENSLT NNMSCPPGCQ IARGVKHIHH 120
PQQQQHPHVP HMNESNYNSR EMHPSNDACP VSPVASESTK ARQSKRPKEG KTVTTPNKKV 180
SKGPRKVKRE AEDLNKVMLG KSQEWKDGIG IMSGGDDLNK QLVVSKSDWK GQDLGLNQVA 240
FDESTMPAPI CSCTGVIRQC YKWGNGGWQS ACCTTTISMY PLPAVPNKRH ARLGGRKMSG 300
SAFNKLLSRL AAEGHDLSAP VDLKNHWAKH GTNRYITIK
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